If 2012 will be the first year that your business (group of entities) files a D.C. combined return, the selection of the "designated agent" is extremely important, as this will impact what type of D.C. return is filed, and when the 2012 return is due (generally, either March 15th or April 15th).
In addition, 2013 estimated payments will need to be made by the "designated agent" and not by the separate entities that will be included in the combined return. Therefore, you need to select the appropriate entity to be the "designated agent.
Also, specific "transition rules" will impact how you file your 2012 extensions for each entity and will determine whether those extensions are due March 15th or April 15th.
The complexity of this analysis and the new compliance burden is something that, unfortunately, companies need to deal with. It may cost more now, but the effort should reduce headaches later on.